species:   Scscl
pid:       PID1591
parent:    Ssc-milR-67
paralog:   
locus:     NW_001820818.1:464789-464862
matures:   ['UCUUGAGUAUCGCUCCAGUGG', 'UUUGGGGCCGAGUAGUCUGGUUU']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820818.1:464789-464862

3 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

          *************************      ***********************          
ACUCUAUAAGCUUUUGGGGCCGAGUAGUCUGGUUUUGAAGGUUUCUUGAGUAUCGCUCCAGUGGCUUGUUUCCA
.....(((((((.(((((((...(((.((.((............)).)).))).))))))).))))))).....
-------------------------------------------UCUUGAGUAUCGCUCCAGUGG---------- l=21 a=1 c
------------UUUGGGGCCGAGUAGUCUGGUUU--------------------------------------- l=23 a=0 c*
-------------------------------------------UCUUGAGUAUCGCUCCAGUGG---------- l=21 a=1 ma
------------UUUGGGGCCGAGUAGUCUGGUUU--------------------------------------- l=23 a=0 ma*

----------------------------------------------UGAGUAUCGCUCCAGUGGCU-------- l=20 a=1 
----------------------------------------------UGAGUAUCGCUCCAGUGGCUU------- l=21 a=1 
----------------------------------------------UGAGUAUCGCUCCAGUGGCUUG------ l=22 a=1 
-------------------------------------------UCUUGAGUAUCGCUCCAGUGG---------- l=21 a=1 (c,ma)
-----------------------------------------UUUCUUGAGUAUCGCUCCAGUGG---------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
